OBO Foundry dashboard analysis¶

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/tmp/ipykernel_6538/4293058459.py:21: FutureWarning:

The `inplace` parameter in pandas.Categorical.reorder_categories is deprecated and will be removed in a future version. Reordering categories will always return a new Categorical object.

Ontologies by number of axioms

Ontologies by number of classes

Ontologies by how many ontologies use it

Different serialisations used

RDF/XML Syntax    34
Turtle            31
unknown           16
OWL/XML Syntax     2
Turtle Syntax      1
Name: syntax, dtype: int64

Breakdown of used Axiom Types

count mean std min 25% 50% 75% max
AnnotationAssertion 68 2610.892857 10868.937624 0.0 43.25 252.0 1629.50 96738.0
Declaration 68 598.761905 1390.795756 0.0 20.50 134.5 542.00 11135.0
SubClassOf 64 671.571429 2659.386573 0.0 2.75 53.5 442.75 23882.0
ObjectPropertyRange 57 30.226190 63.320632 0.0 0.00 14.0 30.50 520.0
ObjectPropertyDomain 56 28.309524 62.669332 0.0 0.00 9.5 28.75 517.0
DataPropertyRange 52 11.107143 24.186035 0.0 0.00 3.0 10.00 170.0
InverseObjectProperties 47 10.333333 21.754010 0.0 0.00 1.0 8.00 126.0
SubObjectPropertyOf 46 35.071429 90.423073 0.0 0.00 3.0 36.50 709.0
DataPropertyDomain 43 12.511905 35.551251 0.0 0.00 1.5 6.00 235.0
DisjointClasses 42 164.607143 1338.884611 0.0 0.00 0.5 10.50 12277.0
ClassAssertion 40 125.928571 460.612578 0.0 0.00 0.0 20.00 3053.0
EquivalentClasses 33 100.059524 671.658411 0.0 0.00 0.0 13.25 6147.0
SubAnnotationPropertyOf 32 5.380952 13.993893 0.0 0.00 0.0 4.25 85.0
SubDataPropertyOf 32 7.476190 27.887241 0.0 0.00 0.0 5.00 242.0
TransitiveObjectProperty 27 2.988095 7.112680 0.0 0.00 0.0 2.25 38.0
FunctionalObjectProperty 25 1.726190 3.638321 0.0 0.00 0.0 1.25 18.0
FunctionalDataProperty 21 1.238095 3.904335 0.0 0.00 0.0 0.25 26.0
AnnotationPropertyRangeOf 21 1.476190 4.322751 0.0 0.00 0.0 0.25 20.0
InverseFunctionalObjectProperty 19 0.738095 2.162768 0.0 0.00 0.0 0.00 12.0
ObjectPropertyAssertion 18 267.083333 1435.070052 0.0 0.00 0.0 0.00 10267.0
SymmetricObjectProperty 16 1.821429 5.779400 0.0 0.00 0.0 0.00 35.0
DataPropertyAssertion 15 92.785714 449.014693 0.0 0.00 0.0 0.00 3617.0
SubPropertyChainOf 14 2.869048 14.751581 0.0 0.00 0.0 0.00 120.0
IrrefexiveObjectProperty 13 1.130952 3.959980 0.0 0.00 0.0 0.00 22.0
AsymmetricObjectProperty 10 0.976190 3.481366 0.0 0.00 0.0 0.00 16.0
DisjointUnion 9 4.285714 17.976270 0.0 0.00 0.0 0.00 116.0
AnnotationPropertyDomain 8 0.214286 0.892694 0.0 0.00 0.0 0.00 6.0
EquivalentObjectProperties 8 0.797619 4.129762 0.0 0.00 0.0 0.00 36.0
ReflexiveObjectProperty 6 0.107143 0.439547 0.0 0.00 0.0 0.00 3.0
DisjointObjectProperties 6 0.226190 1.010203 0.0 0.00 0.0 0.00 7.0
Rule 5 0.559524 3.062998 0.0 0.00 0.0 0.00 25.0
DifferentIndividuals 5 0.380952 2.745883 0.0 0.00 0.0 0.00 25.0
SameIndividual 2 1.607143 12.985643 0.0 0.00 0.0 0.00 118.0
EquivalentDataProperties 1 0.059524 0.545545 0.0 0.00 0.0 0.00 5.0
DatatypeDefinition 1 0.011905 0.109109 0.0 0.00 0.0 0.00 1.0
DisjointDataProperties 1 0.023810 0.218218 0.0 0.00 0.0 0.00 2.0

Breakdown of used OWL Class Expression constructs

count mean std min 25% 50% 75% max
Class 68 2609.154762 9330.177503 0.0 29.0 279.5 1694.00 78469.0
ObjectUnionOf 42 9.619048 18.886410 0.0 0.0 0.5 9.75 88.0
ObjectAllValuesFrom 37 19.857143 51.876857 0.0 0.0 0.0 19.25 400.0
ObjectSomeValuesFrom 35 262.238095 1815.596152 0.0 0.0 0.0 28.50 16614.0
ObjectIntersectionOf 31 95.869048 679.567523 0.0 0.0 0.0 10.75 6217.0
ObjectExactCardinality 28 4.464286 15.174842 0.0 0.0 0.0 2.00 115.0
DataExactCardinality 23 2.071429 4.326399 0.0 0.0 0.0 1.25 18.0
DataSomeValuesFrom 14 1.488095 4.885420 0.0 0.0 0.0 0.00 33.0
ObjectMinCardinality 14 1.226190 3.631692 0.0 0.0 0.0 0.00 19.0
ObjectComplementOf 13 3.285714 19.900700 0.0 0.0 0.0 0.00 179.0
DataAllValuesFrom 13 0.511905 1.532728 0.0 0.0 0.0 0.00 9.0
ObjectMaxCardinality 12 11.273810 97.538914 0.0 0.0 0.0 0.00 894.0
DataHasValue 12 16.630952 62.522435 0.0 0.0 0.0 0.00 494.0
ObjectOneOf 10 5.702381 34.890458 0.0 0.0 0.0 0.00 272.0
ObjectHasValue 9 6.940476 33.612373 0.0 0.0 0.0 0.00 211.0
DataMinCardinality 6 0.214286 1.431752 0.0 0.0 0.0 0.00 13.0
DataMaxCardinality 6 1.190476 6.825671 0.0 0.0 0.0 0.00 59.0
ObjectHasSelf 1 0.011905 0.109109 0.0 0.0 0.0 0.00 1.0

OBO Score (Experimental)

ontology score score_dash score_impact
42 OBO 0.322 0.549 0.095
57 PROVO 0.311 0.504 0.119
77 nfdicore 0.296 0.593 0.000
25 FOAF 0.291 0.333 0.250
27 IAO 0.289 0.578 0.000
54 PMDCO 0.275 0.549 0.000
59 QUDT 0.275 0.549 0.000
19 EMMO_atomistic 0.252 0.504 0.000
3 BWMD-MID 0.252 0.504 0.000
15 EMMO 0.252 0.504 0.000
2 BWMD-DOMAIN 0.252 0.504 0.000
62 SEMMD 0.252 0.504 0.000
21 EMMO_mappings 0.252 0.504 0.000
20 EMMO_crystallography 0.252 0.504 0.000
18 EMMO_Datamodel 0.252 0.504 0.000
4 CCO 0.252 0.504 0.000
61 SAREF 0.241 0.482 0.000
71 m4i 0.241 0.482 0.000
12 DEB 0.234 0.467 0.000
67 UO 0.234 0.467 0.000
0 AMONTOLOGY 0.234 0.467 0.000
64 SO 0.234 0.467 0.000
31 MDO 0.234 0.467 0.000
39 NPO 0.234 0.467 0.000
30 MAMBO 0.234 0.467 0.000
65 SP 0.234 0.467 0.000
38 MaterialsMine 0.222 0.444 0.000
75 mvc 0.222 0.444 0.000
40 NanoMine 0.222 0.444 0.000
13 DISO 0.222 0.444 0.000
72 mat 0.222 0.444 0.000
9 CIF-core 0.222 0.444 0.000
35 MSEO 0.222 0.444 0.000
41 OA 0.222 0.444 0.000
49 OM 0.222 0.444 0.000
37 MatOnto 0.222 0.444 0.000
29 LPBFO 0.219 0.438 0.000
34 MOL_TENSILE 0.219 0.438 0.000
82 tribAIn 0.219 0.438 0.000
68 WILD 0.200 0.400 0.000
14 DSIM 0.200 0.400 0.000
80 periodictable 0.200 0.400 0.000
28 LDO 0.200 0.400 0.000
7 CHEMINF 0.200 0.400 0.000
51 P-Plan 0.200 0.400 0.000
53 PLDO 0.200 0.400 0.000
55 PODO 0.200 0.400 0.000
24 EXPO 0.200 0.400 0.000
1 ASMO 0.200 0.400 0.000
10 CMSO 0.200 0.400 0.000
76 mwo 0.200 0.400 0.000
5 CDCO 0.200 0.400 0.000
63 SKOS_MDO 0.189 0.378 0.000
50 OSMO 0.189 0.378 0.000
66 SSN 0.189 0.378 0.000
36 MSLE 0.189 0.378 0.000
56 PRIMA 0.189 0.378 0.000
11 CSO 0.167 0.333 0.000
60 QUDV 0.167 0.333 0.000
73 matinfo 0.167 0.333 0.000
33 MOL_BRINELL 0.155 0.311 0.000
69 bmo 0.155 0.311 0.000
78 ontorule 0.155 0.311 0.000
32 MDS 0.155 0.311 0.000
81 ssos 0.155 0.311 0.000
52 PATO 0.000 0.000 0.095
8 CHMO 0.000 0.000 0.048
70 enanomapper 0.000 0.000 0.000
17 EMMO_BattINFO 0.000 0.000 0.000
6 CHAMEO 0.000 0.000 0.000
79 opmw 0.000 0.000 0.000
74 metal-alloy 0.000 0.000 0.000
47 OIEmodels 0.000 0.000 0.000
16 EMMO_BVC 0.000 0.000 0.000
22 EMMO_mechanical_testing 0.000 0.000 0.000
26 GPO 0.000 0.000 0.000
58 Photovoltaics 0.000 0.000 0.000
48 OIEsoftware 0.000 0.000 0.000
43 OEO 0.000 0.000 0.000
44 OIEcharacterisation-methods 0.000 0.000 0.000
45 OIEmanufacturing 0.000 0.000 0.000
46 OIEmaterials 0.000 0.000 0.000
83 vimmp 0.000 0.000 0.000
23 EMMO_microstructure 0.000 0.000 0.000

OBO Score Summary

count mean std min 25% 50% 75% max
score 84.0 0.171179 0.098846 0.0 0.155 0.2 0.234 0.322
score_dash 84.0 0.336774 0.192665 0.0 0.311 0.4 0.467 0.593
score_impact 84.0 0.007226 0.033407 0.0 0.000 0.0 0.000 0.250

OBO dependency graph